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Henriques et al. |

Noise2Void: 3D

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Image Analysis
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Step 1: Upload your data

Upload Training Images

Drag your file(s) or upload
  • Your file can be in the following formats:zip
    • The training data are the images that train Noise2Void, 10% of these will be used for validation over training. The image folder must be named 'train' before being zipped. As this app is self supervised the training zip folder will contain only contain noise-y images of the kind you wish to denoise. We recommend using .tiff files but other file formats may work.
or
Don’t have a file?
Use our demo data to run
Use Demo Data

Upload Test Images

Drag your file(s) or upload
  • Your file can be in the following formats:zip
    • The test data are the images that will test how well your trained model performs. This zip folder must contain 2 sub-folders named 'source' and 'target'. 'source' will contain your regular noise-y images. 'target' will contain high resolution versions of your noise-y images. Each source image must have an associated target image with the same file name. We recommend using .tiff files but other file formats may work. If you do not have test data, you can use ours by clicking the 'Need Data?' button below.
or
Don’t have a file?
Use our demo data to run
Use Demo Data
Step 2: Set Parameters
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Step 3: Complete run profile

Train a model to denoise your 3D medical images. Noise2Void is a deep-learning method that can be used to denoise many types of images, including microscopy images. It allows denoising of image data in a self-supervised manner, therefore high-quality, low noise equivalent images are not necessary to train this network. This is performed by "masking" a random subset of pixels in the noisy image and training the network to predict the values in these pixels. The resulting output is a denoised version of the image. Model saving and GPU access available soon.

Example use case: Train a model to take noisey images and remove noise to make the image clearer without needing examples of the clear images to train the model

Technology: U-Net

Citation:
von Chamier, L., Laine, R.F., Jukkala, J. et al. Democratising deep learning for microscopy with ZeroCostDL4Mic. Nat Commun 12, 2276 (2021). https://doi.org/10.1038/s41467-021-22518-0
Released:
Nov-04-2022
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